Index

_

__init__() (nema_quant.phantom.NemaPhantom method)

C

calculate_advanced_metrics() (in module nema_quant.analysis) calculate_nema_metrics() (in module nema_quant.analysis) calculate_nema_metrics_nu4_2008() (in module nema_quant.analysis)

calculate_weighted_cbr_fom() (in module nema_quant.utils) calculate_weighted_cbr_from() (in module nema_quant.analysis) create_cylindrical_mask() (in module nema_quant.analysis) (in module nema_quant.io)

E

extract_canny_mask() (in module nema_quant.utils)

extract_circular_mask_2d() (in module nema_quant.analysis)

F

find_phantom_center() (in module nema_quant.utils)

find_phantom_center_cv2_threshold() (in module nema_quant.utils)

G

generate_boxplot_with_mean_std() (in module nema_quant.reporting) generate_coronal_sphere_plots() (in module nema_quant.reporting) generate_crc_plots_nu4() (in module nema_quant.reporting) generate_iq_plot() (in module nema_quant.reporting) generate_plots() (in module nema_quant.reporting) generate_reportlab_report() (in module nema_quant.reporting)

generate_reportlab_report_nu4() (in module nema_quant.reporting) generate_rois_plots() (in module nema_quant.reporting) generate_spillover_barplot_nu4() (in module nema_quant.reporting) generate_torso_plot() (in module nema_quant.reporting) generate_transverse_sphere_plots() (in module nema_quant.reporting) get_roi() (nema_quant.phantom.NemaPhantom method)

I

image_dims (nema_quant.phantom.NemaPhantom attribute)

L

load_nii_image() (in module nema_quant.io)

M

main() (in module nema_quant.interactive_roi_editor) mm_to_voxel() (in module nema_quant.utils) module nema_quant.analysis nema_quant.interactive_roi_editor nema_quant.io nema_quant.phantom nema_quant.reporting nema_quant.utils

N

nema_quant.analysis module nema_quant.interactive_roi_editor module nema_quant.io module

nema_quant.phantom module nema_quant.reporting module nema_quant.utils module NemaPhantom (class in nema_quant.phantom)

P

phantom_center_voxels (nema_quant.phantom.NemaPhantom attribute)

R

roi_definitions_mm (nema_quant.phantom.NemaPhantom attribute)

rois (nema_quant.phantom.NemaPhantom attribute)

S

save_background_visualization() (in module nema_quant.analysis) save_results_to_txt() (in module nema_quant.reporting)

save_results_to_txt_nu4() (in module nema_quant.reporting) save_sphere_visualization() (in module nema_quant.analysis)

V

voxel_spacing (nema_quant.phantom.NemaPhantom attribute)

voxel_to_mm() (in module nema_quant.utils)